Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Cotton_A_00517

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 540

Length: 900
ACGTcount: A:0.32, C:0.19, G:0.26, T:0.23


Found at i:470 original size:24 final size:24

Alignment explanation


    Indices: 442--489  Score: 69
    Period size: 24  Copynumber: 2.0  Consensus size: 24

        432 AAAAGATGAT

                   *                
        442 GATAGTAGTGATGAGGATGAAGAG
          1 GATAGTACTGATGAGGATGAAGAG

                  *   *             
        466 GATAGTTCTGCTGAGGATGAAGAG
          1 GATAGTACTGATGAGGATGAAGAG

        490 TCCAGTGAGG


Statistics
Matches: 21,  Mismatches: 3, Indels: 0
        0.88            0.12        0.00

Matches are distributed among these distances:
  24   21  1.00

ACGTcount: A:0.33, C:0.04, G:0.40, T:0.23


Consensus pattern (24 bp):   
GATAGTACTGATGAGGATGAAGAG
Done.