Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Cotton_A_00180

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 450

Length: 750
ACGTcount: A:0.26, C:0.30, G:0.17, T:0.27


Found at i:622 original size:21 final size:21

Alignment explanation


    Indices: 553--650  Score: 97
    Period size: 21  Copynumber: 4.7  Consensus size: 21

        543 TCCTTCATCT

                       *        *
        553 GCATACCCTCCTCCACCTTCG
          1 GCATACCCTCCACCACCTTCC

              *  *     ** * *   *
        574 GCTTATCCTCCGTCGCATTCA
          1 GCATACCCTCCACCACCTTCC

              *                  
        595 GCTTACCCTCCACCACCTTCC
          1 GCATACCCTCCACCACCTTCC

                                 
        616 GCATACCCTCCACCACCTTCC
          1 GCATACCCTCCACCACCTTCC

            *             
        637 ACATACCCTCCACC
          1 GCATACCCTCCACC

        651 TCCGCCACAT


Statistics
Matches: 62,  Mismatches: 15, Indels: 0
        0.81            0.19        0.00

Matches are distributed among these distances:
  21   62  1.00

ACGTcount: A:0.17, C:0.52, G:0.07, T:0.23


Consensus pattern (21 bp):   
GCATACCCTCCACCACCTTCC

Done.