Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Cotton_A_37295

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 376

Length: 627
ACGTcount: A:0.27, C:0.19, G:0.23, T:0.31


Found at i:174 original size:78 final size:78

Alignment explanation


    Indices: 45--195  Score: 257
    Period size: 78  Copynumber: 1.9  Consensus size: 78

         35 TTGTTTCAAA

                                *         *          *  *                    
         45 GGTTCCAACCATCATCCTTGGAATGGGTGCTTTGTTTGGCTTTCTTGAGCAGTCTGATGTGCCGT
          1 GGTTCCAACCATCATCCTTGAAATGGGTGCATTGTTTGGCTCTCCTGAGCAGTCTGATGTGCCGT

                         
        110 CAATAGCTGCGAT
         66 CAATAGCTGCGAT

                   *                                                         
        123 GGTTCCAGCCATCATCCTTGAAATGGGTGCATTGTTTGGCTCTCCTGAGCAGTCTGATGTGCCGT
          1 GGTTCCAACCATCATCCTTGAAATGGGTGCATTGTTTGGCTCTCCTGAGCAGTCTGATGTGCCGT

                    
        188 CAATAGCT
         66 CAATAGCT

        196 ATGATGATTC


Statistics
Matches: 68,  Mismatches: 5, Indels: 0
        0.93            0.07        0.00

Matches are distributed among these distances:
  78   68  1.00

ACGTcount: A:0.17, C:0.23, G:0.26, T:0.33


Consensus pattern (78 bp):   
GGTTCCAACCATCATCCTTGAAATGGGTGCATTGTTTGGCTCTCCTGAGCAGTCTGATGTGCCGT
CAATAGCTGCGAT
Done.