Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Cotton_A_30553

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2241
ACGTcount: A:0.32, C:0.18, G:0.22, T:0.28


Found at i:1514 original size:18 final size:18

Alignment explanation


    Indices: 1491--1538  Score: 60
    Period size: 18  Copynumber: 2.7  Consensus size: 18

       1481 TGAGCGATGT

                  *           
       1491 AAGTCCTAGGATCGCTGC
          1 AAGTCCAAGGATCGCTGC

                  *     *    *
       1509 AAGTCCGAGGATTGCTGT
          1 AAGTCCAAGGATCGCTGC

                        
       1527 AAGTCCAAGGAT
          1 AAGTCCAAGGAT

       1539 ATCTATAAAC


Statistics
Matches: 26,  Mismatches: 4, Indels: 0
        0.87            0.13        0.00

Matches are distributed among these distances:
  18   26  1.00

ACGTcount: A:0.27, C:0.21, G:0.29, T:0.23


Consensus pattern (18 bp):   
AAGTCCAAGGATCGCTGC
Done.