Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Cotton_A_30896

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 435

Length: 725
ACGTcount: A:0.20, C:0.25, G:0.30, T:0.24


Found at i:535 original size:3 final size:3

Alignment explanation


    Indices: 527--551  Score: 50
    Period size: 3  Copynumber: 8.3  Consensus size: 3

        517 GGGTACCTTA

                                             
        527 TGG TGG TGG TGG TGG TGG TGG TGG T
          1 TGG TGG TGG TGG TGG TGG TGG TGG T

        552 TTGGGGGATC


Statistics
Matches: 22,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
   3   22  1.00

ACGTcount: A:0.00, C:0.00, G:0.64, T:0.36


Consensus pattern (3 bp):   
TGG

Done.