Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Cotton_A_22636

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2571
ACGTcount: A:0.29, C:0.20, G:0.26, T:0.25


Found at i:1489 original size:6 final size:6

Alignment explanation


    Indices: 1475--1555  Score: 108
    Period size: 6  Copynumber: 13.5  Consensus size: 6

       1465 GCAAGCTCGA

                       *      *                    *             * 
       1475 CTCAGG CTCATG CTCATG CTCAGG CTCAGG CTCAAG CTCAGG CTCAAG
          1 CTCAGG CTCAGG CTCAGG CTCAGG CTCAGG CTCAGG CTCAGG CTCAGG

                *      *                          
       1523 CTCAAG CTCAAG CTCAGG CTCAGG CTCAGG CTC
          1 CTCAGG CTCAGG CTCAGG CTCAGG CTCAGG CTC

       1556 GACCCACAAC


Statistics
Matches: 69,  Mismatches: 6, Indels: 0
        0.92            0.08        0.00

Matches are distributed among these distances:
   6   69  1.00

ACGTcount: A:0.21, C:0.35, G:0.25, T:0.20


Consensus pattern (6 bp):   
CTCAGG

Done.