Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Cotton_A_06045

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 752

Length: 1254
ACGTcount: A:0.32, C:0.20, G:0.24, T:0.24


Found at i:435 original size:6 final size:6

Alignment explanation


    Indices: 424--488  Score: 130
    Period size: 6  Copynumber: 10.8  Consensus size: 6

        414 TTACACTACT

                                                                   
        424 CATAGC CATAGC CATAGC CATAGC CATAGC CATAGC CATAGC CATAGC
          1 CATAGC CATAGC CATAGC CATAGC CATAGC CATAGC CATAGC CATAGC

                               
        472 CATAGC CATAGC CATAG
          1 CATAGC CATAGC CATAG

        489 GCCTAAGCCT


Statistics
Matches: 59,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
   6   59  1.00

ACGTcount: A:0.34, C:0.32, G:0.17, T:0.17


Consensus pattern (6 bp):   
CATAGC

Done.