Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Cotton_A_30090

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3405
ACGTcount: A:0.33, C:0.18, G:0.24, T:0.26


Found at i:272 original size:27 final size:27

Alignment explanation


    Indices: 242--293  Score: 79
    Period size: 27  Copynumber: 1.9  Consensus size: 27

        232 ATTCTAAACC

                          *             
        242 TTGGTGAG-GAAACTCAAGTGTTGGACT
          1 TTGGTG-GCGAAACACAAGTGTTGGACT

                                     
        269 TTGGTGGCGAAACACAAGTGTTGGA
          1 TTGGTGGCGAAACACAAGTGTTGGA

        294 TGATTTAGAT


Statistics
Matches: 23,  Mismatches: 1, Indels: 2
        0.88            0.04        0.08

Matches are distributed among these distances:
  26    1  0.04
  27   22  0.96

ACGTcount: A:0.27, C:0.12, G:0.35, T:0.27


Consensus pattern (27 bp):   
TTGGTGGCGAAACACAAGTGTTGGACT
Done.