Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Cotton_A_21995

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 228

Length: 381
ACGTcount: A:0.26, C:0.26, G:0.24, T:0.23


Found at i:194 original size:18 final size:18

Alignment explanation


    Indices: 149--194  Score: 56
    Period size: 18  Copynumber: 2.6  Consensus size: 18

        139 GATGGGAATG

                       *     *
        149 GGCATAGACACCGGCACC
          1 GGCATAGACACAGGCACA

               * *            
        167 GGCGTCGACACAGGCACA
          1 GGCATAGACACAGGCACA

                      
        185 GGCATAGACA
          1 GGCATAGACA

        195 TGGGAGTCAT


Statistics
Matches: 22,  Mismatches: 6, Indels: 0
        0.79            0.21        0.00

Matches are distributed among these distances:
  18   22  1.00

ACGTcount: A:0.30, C:0.33, G:0.30, T:0.07


Consensus pattern (18 bp):   
GGCATAGACACAGGCACA
Done.