Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Cotton_A_14613

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 349

Length: 582
ACGTcount: A:0.31, C:0.15, G:0.32, T:0.22


Found at i:423 original size:21 final size:21

Alignment explanation


    Indices: 397--451  Score: 92
    Period size: 21  Copynumber: 2.6  Consensus size: 21

        387 CTTTGGGGGA

                                 
        397 ATGGGCGGCATGGGCGACATG
          1 ATGGGCGGCATGGGCGACATG

                          *      
        418 ATGGGCGGCATGGGTGACATG
          1 ATGGGCGGCATGGGCGACATG

                 *       
        439 ATGGGTGGCATGG
          1 ATGGGCGGCATGG

        452 ATGAGTTTGA


Statistics
Matches: 32,  Mismatches: 2, Indels: 0
        0.94            0.06        0.00

Matches are distributed among these distances:
  21   32  1.00

ACGTcount: A:0.18, C:0.15, G:0.49, T:0.18


Consensus pattern (21 bp):   
ATGGGCGGCATGGGCGACATG
Done.