Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Cotton_A_26974

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 565

Length: 942
ACGTcount: A:0.24, C:0.14, G:0.29, T:0.32


Found at i:555 original size:18 final size:18

Alignment explanation


    Indices: 528--565  Score: 58
    Period size: 18  Copynumber: 2.1  Consensus size: 18

        518 CATATCATGA

                 *            
        528 TGATTTTGGTGGATTTGG
          1 TGATTATGGTGGATTTGG

                        *     
        546 TGATTATGGTGGCTTTGG
          1 TGATTATGGTGGATTTGG

              
        564 TG
          1 TG

        566 GTGGTGCTTT


Statistics
Matches: 18,  Mismatches: 2, Indels: 0
        0.90            0.10        0.00

Matches are distributed among these distances:
  18   18  1.00

ACGTcount: A:0.11, C:0.03, G:0.39, T:0.47


Consensus pattern (18 bp):   
TGATTATGGTGGATTTGG
Done.