Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Cotton_A_20257

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 200

Length: 294
ACGTcount: A:0.31, C:0.20, G:0.33, T:0.17


Found at i:212 original size:21 final size:21

Alignment explanation


    Indices: 187--262  Score: 89
    Period size: 21  Copynumber: 3.6  Consensus size: 21

        177 AGAAGCTCTG

                                 
        187 GCCGAAACCGAGGTGAAGCCA
          1 GCCGAAACCGAGGTGAAGCCA

                                *
        208 GCCGAAACCGAGGTGAAGCCT
          1 GCCGAAACCGAGGTGAAGCCA

              *     *    *   *   
        229 GCGGAAACTGAGGCGAAACCA
          1 GCCGAAACCGAGGTGAAGCCA

              *   *      
        250 GCAGAACCCGAGG
          1 GCCGAAACCGAGG

        263 CAAAGCCCAC


Statistics
Matches: 46,  Mismatches: 9, Indels: 0
        0.84            0.16        0.00

Matches are distributed among these distances:
  21   46  1.00

ACGTcount: A:0.33, C:0.28, G:0.34, T:0.05


Consensus pattern (21 bp):   
GCCGAAACCGAGGTGAAGCCA

Done.