Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Cotton_A_38763

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 985

Length: 1643
ACGTcount: A:0.27, C:0.19, G:0.24, T:0.30


Found at i:1532 original size:17 final size:18

Alignment explanation


    Indices: 1502--1538  Score: 58
    Period size: 17  Copynumber: 2.1  Consensus size: 18

       1492 CATCAACATC

                              
       1502 TGATATTCCAGAAGCTGG
          1 TGATATTCCAGAAGCTGG

                          *   
       1520 TGATATT-CAGAAGGTGG
          1 TGATATTCCAGAAGCTGG

              
       1537 TG
          1 TG

       1539 GACCTTGTGT


Statistics
Matches: 18,  Mismatches: 1, Indels: 1
        0.90            0.05        0.05

Matches are distributed among these distances:
  17   11  0.61
  18    7  0.39

ACGTcount: A:0.27, C:0.11, G:0.32, T:0.30


Consensus pattern (18 bp):   
TGATATTCCAGAAGCTGG
Done.