Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Cotton_A_08238

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 4155
ACGTcount: A:0.28, C:0.20, G:0.23, T:0.28


Found at i:3394 original size:6 final size:6

Alignment explanation


    Indices: 3385--3419  Score: 52
    Period size: 6  Copynumber: 5.8  Consensus size: 6

       3375 ACCATCATCA

                                      *   *         
       3385 CCACCT CCACCT CCACCT CCACCA CCCCCT CCACC
          1 CCACCT CCACCT CCACCT CCACCT CCACCT CCACC

       3420 GCCTCCTCTT


Statistics
Matches: 25,  Mismatches: 4, Indels: 0
        0.86            0.14        0.00

Matches are distributed among these distances:
   6   25  1.00

ACGTcount: A:0.17, C:0.71, G:0.00, T:0.11


Consensus pattern (6 bp):   
CCACCT

Done.