Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Cotton_A_22351

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 1794
ACGTcount: A:0.33, C:0.15, G:0.25, T:0.27


Found at i:1766 original size:6 final size:6

Alignment explanation


    Indices: 1751--1785  Score: 52
    Period size: 6  Copynumber: 5.8  Consensus size: 6

       1741 TATGATTACG

                 *                  *               
       1751 ATGATA ATGATT ATGATT ATGGTT ATGATT ATGAT
          1 ATGATT ATGATT ATGATT ATGATT ATGATT ATGAT

       1786 GGATATTGA


Statistics
Matches: 26,  Mismatches: 3, Indels: 0
        0.90            0.10        0.00

Matches are distributed among these distances:
   6   26  1.00

ACGTcount: A:0.34, C:0.00, G:0.20, T:0.46


Consensus pattern (6 bp):   
ATGATT

Done.