Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Cotton_A_21731

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 246

Length: 411
ACGTcount: A:0.23, C:0.25, G:0.24, T:0.28


Found at i:150 original size:15 final size:15

Alignment explanation


    Indices: 97--151  Score: 71
    Period size: 15  Copynumber: 3.9  Consensus size: 15

         87 TCCACCACCG

                       *   
         97 GGATATCCTCCACAA
          1 GGATATCCTCCTCAA

                           
        112 GGATA---TCCTCAA
          1 GGATATCCTCCTCAA

              *            
        124 GGTTATCCTCCTCAA
          1 GGATATCCTCCTCAA

                         
        139 GGATATCCTCCTC
          1 GGATATCCTCCTC

        152 CTTACGCCCC


Statistics
Matches: 34,  Mismatches: 3, Indels: 6
        0.79            0.07        0.14

Matches are distributed among these distances:
  12   10  0.29
  15   24  0.71

ACGTcount: A:0.25, C:0.33, G:0.15, T:0.27


Consensus pattern (15 bp):   
GGATATCCTCCTCAA
Done.