Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Cotton_A_05616

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2739
ACGTcount: A:0.28, C:0.19, G:0.24, T:0.29


Found at i:1581 original size:15 final size:16

Alignment explanation


    Indices: 1549--1581  Score: 50
    Period size: 16  Copynumber: 2.1  Consensus size: 16

       1539 TGCTGCTGTT

                    *       
       1549 AGTTGCCATTCAAATG
          1 AGTTGCCAATCAAATG

                            
       1565 AGTTGCCAATC-AATG
          1 AGTTGCCAATCAAATG

              
       1580 AG
          1 AG

       1582 CTGTGTCTTG


Statistics
Matches: 16,  Mismatches: 1, Indels: 1
        0.89            0.06        0.06

Matches are distributed among these distances:
  15    6  0.38
  16   10  0.62

ACGTcount: A:0.33, C:0.18, G:0.21, T:0.27


Consensus pattern (16 bp):   
AGTTGCCAATCAAATG
Done.