Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Cotton_A_15791

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 612

Length: 1020
ACGTcount: A:0.25, C:0.28, G:0.23, T:0.24


Found at i:104 original size:3 final size:3

Alignment explanation


    Indices: 98--126  Score: 58
    Period size: 3  Copynumber: 9.7  Consensus size: 3

         88 CCTCCCTCCT

                                                  
         98 CCA CCA CCA CCA CCA CCA CCA CCA CCA CC
          1 CCA CCA CCA CCA CCA CCA CCA CCA CCA CC

        127 GACAACGATC


Statistics
Matches: 26,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
   3   26  1.00

ACGTcount: A:0.31, C:0.69, G:0.00, T:0.00


Consensus pattern (3 bp):   
CCA

Done.