Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Cotton_A_22055

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 441

Length: 735
ACGTcount: A:0.27, C:0.30, G:0.20, T:0.22


Found at i:124 original size:21 final size:21

Alignment explanation


    Indices: 94--171  Score: 111
    Period size: 21  Copynumber: 3.7  Consensus size: 21

         84 TACTGATACG

                 *     *         
         94 CCCGAGTCACCCGATTCCACA
          1 CCCGAATCACCTGATTCCACA

            *                    
        115 ACCGAATCACCTGATTCCACA
          1 CCCGAATCACCTGATTCCACA

                                 
        136 CCCGAATCACCTGATTCCACA
          1 CCCGAATCACCTGATTCCACA

                 **        
        157 CCCGAGGCACCTGAT
          1 CCCGAATCACCTGAT

        172 GATGACTATT


Statistics
Matches: 51,  Mismatches: 6, Indels: 0
        0.89            0.11        0.00

Matches are distributed among these distances:
  21   51  1.00

ACGTcount: A:0.27, C:0.42, G:0.14, T:0.17


Consensus pattern (21 bp):   
CCCGAATCACCTGATTCCACA
Done.