Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Cotton_A_30924

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 208

Length: 348
ACGTcount: A:0.32, C:0.26, G:0.15, T:0.26


Found at i:105 original size:3 final size:3

Alignment explanation


    Indices: 97--122  Score: 52
    Period size: 3  Copynumber: 8.7  Consensus size: 3

         87 GAAAGAAACT

                                              
         97 TCA TCA TCA TCA TCA TCA TCA TCA TC
          1 TCA TCA TCA TCA TCA TCA TCA TCA TC

        123 GAAGGGACGT


Statistics
Matches: 23,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
   3   23  1.00

ACGTcount: A:0.31, C:0.35, G:0.00, T:0.35


Consensus pattern (3 bp):   
TCA

Found at i:228 original size:24 final size:26

Alignment explanation


    Indices: 181--228  Score: 64
    Period size: 24  Copynumber: 1.9  Consensus size: 26

        171 CATGATCAAA

                              **      
        181 ACCACCCCGTCATCATCATTAACATC
          1 ACCACCCCGTCATCATCAAAAACATC

                                    
        207 ACCA-CCC-TCATCATCAAAAACA
          1 ACCACCCCGTCATCATCAAAAACA

        229 AAAAGATGTG


Statistics
Matches: 20,  Mismatches: 2, Indels: 2
        0.83            0.08        0.08

Matches are distributed among these distances:
  24   13  0.65
  25    3  0.15
  26    4  0.20

ACGTcount: A:0.38, C:0.42, G:0.02, T:0.19


Consensus pattern (26 bp):   
ACCACCCCGTCATCATCAAAAACATC
Done.