Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Cotton_A_00901

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 856

Length: 1428
ACGTcount: A:0.26, C:0.18, G:0.25, T:0.31


Found at i:349 original size:16 final size:16

Alignment explanation


    Indices: 325--355  Score: 53
    Period size: 16  Copynumber: 1.9  Consensus size: 16

        315 TGGTTTACAA

                            
        325 AGGAAGAGGAAGAAGG
          1 AGGAAGAGGAAGAAGG

                *          
        341 AGGAGGAGGAAGAAG
          1 AGGAAGAGGAAGAAG

        356 AGGGTGAATT


Statistics
Matches: 14,  Mismatches: 1, Indels: 0
        0.93            0.07        0.00

Matches are distributed among these distances:
  16   14  1.00

ACGTcount: A:0.48, C:0.00, G:0.52, T:0.00


Consensus pattern (16 bp):   
AGGAAGAGGAAGAAGG
Done.