Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Cotton_A_12087

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 478

Length: 798
ACGTcount: A:0.32, C:0.22, G:0.21, T:0.25


Found at i:594 original size:3 final size:3

Alignment explanation


    Indices: 586--612  Score: 54
    Period size: 3  Copynumber: 9.0  Consensus size: 3

        576 AGTATCTAAA

                                               
        586 GAT GAT GAT GAT GAT GAT GAT GAT GAT
          1 GAT GAT GAT GAT GAT GAT GAT GAT GAT

        613 ATTGAACAAG


Statistics
Matches: 24,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
   3   24  1.00

ACGTcount: A:0.33, C:0.00, G:0.33, T:0.33


Consensus pattern (3 bp):   
GAT

Done.