Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Cotton_A_38213

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3603
ACGTcount: A:0.35, C:0.16, G:0.27, T:0.21


Found at i:3294 original size:21 final size:21

Alignment explanation


    Indices: 3269--3310  Score: 75
    Period size: 21  Copynumber: 2.0  Consensus size: 21

       3259 CTGAAGACTA

                   *             
       3269 GGAAGGAGCCTGAGGATGGTG
          1 GGAAGGAACCTGAGGATGGTG

                                 
       3290 GGAAGGAACCTGAGGATGGTG
          1 GGAAGGAACCTGAGGATGGTG

       3311 AGAACAGAAG


Statistics
Matches: 20,  Mismatches: 1, Indels: 0
        0.95            0.05        0.00

Matches are distributed among these distances:
  21   20  1.00

ACGTcount: A:0.26, C:0.10, G:0.50, T:0.14


Consensus pattern (21 bp):   
GGAAGGAACCTGAGGATGGTG
Done.