Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Cotton_A_00387

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 765

Length: 1275
ACGTcount: A:0.27, C:0.15, G:0.30, T:0.28


Found at i:181 original size:12 final size:12

Alignment explanation


    Indices: 164--188  Score: 50
    Period size: 12  Copynumber: 2.1  Consensus size: 12

        154 GCTCACCGGC

                        
        164 CTGAGGCGGAGG
          1 CTGAGGCGGAGG

                        
        176 CTGAGGCGGAGG
          1 CTGAGGCGGAGG

             
        188 C
          1 C

        189 GCAAGCTGGG


Statistics
Matches: 13,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  12   13  1.00

ACGTcount: A:0.16, C:0.20, G:0.56, T:0.08


Consensus pattern (12 bp):   
CTGAGGCGGAGG
Done.