Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Cotton_A_06567

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 264

Length: 441
ACGTcount: A:0.27, C:0.23, G:0.20, T:0.30


Found at i:43 original size:9 final size:9

Alignment explanation


    Indices: 29--56  Score: 56
    Period size: 9  Copynumber: 3.1  Consensus size: 9

         19 ATTTCTCCTT

                     
         29 CACTTACAC
          1 CACTTACAC

                     
         38 CACTTACAC
          1 CACTTACAC

                     
         47 CACTTACAC
          1 CACTTACAC

             
         56 C
          1 C

         57 CCCAGTCTCA


Statistics
Matches: 19,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
   9   19  1.00

ACGTcount: A:0.32, C:0.46, G:0.00, T:0.21


Consensus pattern (9 bp):   
CACTTACAC
Done.