Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Cotton_A_23123

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 482

Length: 804
ACGTcount: A:0.27, C:0.23, G:0.23, T:0.28


Found at i:640 original size:12 final size:12

Alignment explanation


    Indices: 620--656  Score: 56
    Period size: 12  Copynumber: 3.1  Consensus size: 12

        610 GAAGAAGATG

                *       
        620 ACGGTGGTGGAA
          1 ACGGCGGTGGAA

                     *  
        632 ACGGCGGTGCAA
          1 ACGGCGGTGGAA

                        
        644 ACGGCGGTGGAA
          1 ACGGCGGTGGAA

             
        656 A
          1 A

        657 TGGAAATAAC


Statistics
Matches: 22,  Mismatches: 3, Indels: 0
        0.88            0.12        0.00

Matches are distributed among these distances:
  12   22  1.00

ACGTcount: A:0.27, C:0.16, G:0.46, T:0.11


Consensus pattern (12 bp):   
ACGGCGGTGGAA
Done.