Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Cotton_A_08397

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 444

Length: 741
ACGTcount: A:0.30, C:0.19, G:0.23, T:0.27


Found at i:584 original size:6 final size:6

Alignment explanation


    Indices: 573--601  Score: 51
    Period size: 6  Copynumber: 5.0  Consensus size: 6

        563 CAGGGTCGGA

                                              
        573 GAGCAT GAGCAT GAGCAT GAGCAT G-GCAT
          1 GAGCAT GAGCAT GAGCAT GAGCAT GAGCAT

        602 ACAGTTCTGA


Statistics
Matches: 23,  Mismatches: 0, Indels: 1
        0.96            0.00        0.04

Matches are distributed among these distances:
   5    4  0.17
   6   19  0.83

ACGTcount: A:0.31, C:0.17, G:0.34, T:0.17


Consensus pattern (6 bp):   
GAGCAT

Done.