Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Cotton_A_38686

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 207

Length: 345
ACGTcount: A:0.29, C:0.25, G:0.22, T:0.24


Found at i:215 original size:6 final size:6

Alignment explanation


    Indices: 206--230  Score: 50
    Period size: 6  Copynumber: 4.2  Consensus size: 6

        196 GAACCATCAC

                                         
        206 CACCCA CACCCA CACCCA CACCCA C
          1 CACCCA CACCCA CACCCA CACCCA C

        231 TCCACCAGCT


Statistics
Matches: 19,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
   6   19  1.00

ACGTcount: A:0.32, C:0.68, G:0.00, T:0.00


Consensus pattern (6 bp):   
CACCCA

Done.