Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Cotton_A_02899

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2481
ACGTcount: A:0.30, C:0.20, G:0.22, T:0.27


Found at i:58 original size:3 final size:3

Alignment explanation


    Indices: 50--96  Score: 69
    Period size: 3  Copynumber: 15.7  Consensus size: 3

         40 GCCGCTGTTG

                                                              *         
         50 CTT CTT CTT -TGT CTT CTT CTT CTT CTT CTT CTT CTT CCT CTT CTT
          1 CTT CTT CTT CT-T CTT CTT CTT CTT CTT CTT CTT CTT CTT CTT CTT

              
         95 CT
          1 CT

         97 CACTTTCAAC


Statistics
Matches: 40,  Mismatches: 2, Indels: 4
        0.87            0.04        0.09

Matches are distributed among these distances:
   2    1  0.03
   3   38  0.95
   4    1  0.03

ACGTcount: A:0.00, C:0.34, G:0.02, T:0.64


Consensus pattern (3 bp):   
CTT

Done.