Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Cotton_A_27241

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2070
ACGTcount: A:0.32, C:0.19, G:0.24, T:0.24


Found at i:158 original size:6 final size:6

Alignment explanation


    Indices: 147--175  Score: 58
    Period size: 6  Copynumber: 4.8  Consensus size: 6

        137 TTAACAGTAG

                                             
        147 CAACCC CAACCC CAACCC CAACCC CAACC
          1 CAACCC CAACCC CAACCC CAACCC CAACC

        176 ACCACTACCA


Statistics
Matches: 23,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
   6   23  1.00

ACGTcount: A:0.34, C:0.66, G:0.00, T:0.00


Consensus pattern (6 bp):   
CAACCC

Done.