Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Cotton_A_24432

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 1881
ACGTcount: A:0.31, C:0.15, G:0.22, T:0.33


Found at i:1065 original size:105 final size:105

Alignment explanation


    Indices: 878--1073  Score: 252
    Period size: 105  Copynumber: 1.9  Consensus size: 105

        868 CTTAATATTG

                *                                *              *    * *     
        878 TCACGTATAATATATTGATCGATGCACATTGCAAGGATGGGATGATTGTTGATGCTGTACATATT
          1 TCACATATAATATATTGATCGATGCACATTGCAAGGAAGGGATGATTGTTGAAGCTGAAAATATT

                *  *           *                    
        943 GTTGGCATAATGAGAAAGCGAGGCATCGAACCTGATGTTA
         66 GTTGACACAATGAGAAAGCAAGGCATCGAACCTGATGTTA

                             * *     *                   *                   
        983 TCACATATAATATATTGGTTGATGCGCATTGC-AGAGAAGGGATGGTT-TGTGAAGCTGAAAATA
          1 TCACATATAATATATTGATCGATGCACATTGCAAG-GAAGGGATGATTGT-TGAAGCTGAAAATA

                                        
       1046 TTGTTGACACAATGAGAAAGCAAGGCAT
         64 TTGTTGACACAATGAGAAAGCAAGGCAT

       1074 TGAGCCAAAT


Statistics
Matches: 77,  Mismatches: 12, Indels: 4
        0.83            0.13        0.04

Matches are distributed among these distances:
 104    3  0.04
 105   74  0.96

ACGTcount: A:0.33, C:0.12, G:0.26, T:0.29


Consensus pattern (105 bp):   
TCACATATAATATATTGATCGATGCACATTGCAAGGAAGGGATGATTGTTGAAGCTGAAAATATT
GTTGACACAATGAGAAAGCAAGGCATCGAACCTGATGTTA

Done.