Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Cotton_A_17136

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 484

Length: 807
ACGTcount: A:0.30, C:0.20, G:0.25, T:0.26


Found at i:493 original size:30 final size:30

Alignment explanation


    Indices: 457--516  Score: 120
    Period size: 30  Copynumber: 2.0  Consensus size: 30

        447 TTCATTAGAG

                                          
        457 GATAATTCGAGTACACCAACAGAGAATTGT
          1 GATAATTCGAGTACACCAACAGAGAATTGT

                                          
        487 GATAATTCGAGTACACCAACAGAGAATTGT
          1 GATAATTCGAGTACACCAACAGAGAATTGT

        517 TCTAGTTCTG


Statistics
Matches: 30,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  30   30  1.00

ACGTcount: A:0.40, C:0.17, G:0.20, T:0.23


Consensus pattern (30 bp):   
GATAATTCGAGTACACCAACAGAGAATTGT
Done.