Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Cotton_A_07365

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 208

Length: 348
ACGTcount: A:0.21, C:0.36, G:0.17, T:0.27


Found at i:165 original size:3 final size:3

Alignment explanation


    Indices: 157--188  Score: 55
    Period size: 3  Copynumber: 10.7  Consensus size: 3

        147 CCAACTTTTC

                                          *           
        157 TCA TCA TCA TCA TCA TCA TCA TCG TCA TCA TC
          1 TCA TCA TCA TCA TCA TCA TCA TCA TCA TCA TC

        189 TTCTTCTTCT


Statistics
Matches: 27,  Mismatches: 2, Indels: 0
        0.93            0.07        0.00

Matches are distributed among these distances:
   3   27  1.00

ACGTcount: A:0.28, C:0.34, G:0.03, T:0.34


Consensus pattern (3 bp):   
TCA

Done.