Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Cotton_A_08376

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 207

Length: 345
ACGTcount: A:0.26, C:0.26, G:0.19, T:0.29


Found at i:215 original size:15 final size:15

Alignment explanation


    Indices: 195--225  Score: 62
    Period size: 15  Copynumber: 2.1  Consensus size: 15

        185 AGACATGGGG

                           
        195 TGATTGTTCCTTGTC
          1 TGATTGTTCCTTGTC

                           
        210 TGATTGTTCCTTGTC
          1 TGATTGTTCCTTGTC

             
        225 T
          1 T

        226 TTATCGGCTC


Statistics
Matches: 16,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  15   16  1.00

ACGTcount: A:0.06, C:0.19, G:0.19, T:0.55


Consensus pattern (15 bp):   
TGATTGTTCCTTGTC
Done.