Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Cotton_A_22693

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 1740
ACGTcount: A:0.26, C:0.20, G:0.25, T:0.29


Found at i:1629 original size:15 final size:15

Alignment explanation


    Indices: 1609--1641  Score: 57
    Period size: 15  Copynumber: 2.2  Consensus size: 15

       1599 GATCATAAAC

                           
       1609 GAAAGTGAAAAGTTG
          1 GAAAGTGAAAAGTTG

                     *     
       1624 GAAAGTGAACAGTTG
          1 GAAAGTGAAAAGTTG

               
       1639 GAA
          1 GAA

       1642 CTTAGCTTCG


Statistics
Matches: 17,  Mismatches: 1, Indels: 0
        0.94            0.06        0.00

Matches are distributed among these distances:
  15   17  1.00

ACGTcount: A:0.45, C:0.03, G:0.33, T:0.18


Consensus pattern (15 bp):   
GAAAGTGAAAAGTTG
Done.