Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Cotton_A_40586

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2463
ACGTcount: A:0.31, C:0.18, G:0.25, T:0.26


Found at i:513 original size:27 final size:27

Alignment explanation


    Indices: 481--548  Score: 109
    Period size: 27  Copynumber: 2.5  Consensus size: 27

        471 GAATTCTGAC

                             **      * 
        481 GACAAGAAATCTGATTCGGATGAGACT
          1 GACAAGAAATCTGATTCAAATGAGAAT

                                       
        508 GACAAGAAATCTGATTCAAATGAGAAT
          1 GACAAGAAATCTGATTCAAATGAGAAT

                          
        535 GACAAGAAATCTGA
          1 GACAAGAAATCTGA

        549 AGAGAACAAT


Statistics
Matches: 38,  Mismatches: 3, Indels: 0
        0.93            0.07        0.00

Matches are distributed among these distances:
  27   38  1.00

ACGTcount: A:0.44, C:0.13, G:0.22, T:0.21


Consensus pattern (27 bp):   
GACAAGAAATCTGATTCAAATGAGAAT
Done.