Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Cotton_A_03372

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2127
ACGTcount: A:0.30, C:0.20, G:0.24, T:0.26


Found at i:183 original size:12 final size:12

Alignment explanation


    Indices: 166--196  Score: 62
    Period size: 12  Copynumber: 2.6  Consensus size: 12

        156 GTTACAGCAG

                        
        166 CAGCAGCTGCAT
          1 CAGCAGCTGCAT

                        
        178 CAGCAGCTGCAT
          1 CAGCAGCTGCAT

                   
        190 CAGCAGC
          1 CAGCAGC

        197 CGTTGCCGTT


Statistics
Matches: 19,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  12   19  1.00

ACGTcount: A:0.26, C:0.35, G:0.26, T:0.13


Consensus pattern (12 bp):   
CAGCAGCTGCAT

Found at i:493 original size:3 final size:3

Alignment explanation


    Indices: 485--528  Score: 88
    Period size: 3  Copynumber: 14.7  Consensus size: 3

        475 AAGCATCCAG

                                                                      
        485 AAC AAC AAC AAC AAC AAC AAC AAC AAC AAC AAC AAC AAC AAC AA
          1 AAC AAC AAC AAC AAC AAC AAC AAC AAC AAC AAC AAC AAC AAC AA

        529 AAGCTTGTTT


Statistics
Matches: 41,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
   3   41  1.00

ACGTcount: A:0.68, C:0.32, G:0.00, T:0.00


Consensus pattern (3 bp):   
AAC

Done.