Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Cotton_A_03843

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 838

Length: 1398
ACGTcount: A:0.34, C:0.23, G:0.19, T:0.24


Found at i:758 original size:48 final size:48

Alignment explanation


    Indices: 640--760  Score: 190
    Period size: 48  Copynumber: 2.5  Consensus size: 48

        630 AGCCGTAACA

                  *  *          *                           
        640 GCTGAACCCGTAAAGCAGGAGGTTACTAATACTCCATCAGTCTCGAAG
          1 GCTGAATCCATAAAGCAGGATGTTACTAATACTCCATCAGTCTCGAAG

                   *                                        
        688 GCTGAATTCATAAAGCAGGATGTTACTAATACTCCATCAGTCTCGAAG
          1 GCTGAATCCATAAAGCAGGATGTTACTAATACTCCATCAGTCTCGAAG

                                      
        736 GCTGAATCCATAAAGC-GAGATGTTA
          1 GCTGAATCCATAAAGCAG-GATGTTA

        761 ATACTACTGC


Statistics
Matches: 67,  Mismatches: 5, Indels: 2
        0.91            0.07        0.03

Matches are distributed among these distances:
  47    1  0.01
  48   66  0.99

ACGTcount: A:0.33, C:0.21, G:0.21, T:0.24


Consensus pattern (48 bp):   
GCTGAATCCATAAAGCAGGATGTTACTAATACTCCATCAGTCTCGAAG
Done.