Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Cotton_A_32050

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2019
ACGTcount: A:0.31, C:0.16, G:0.25, T:0.28


Found at i:60 original size:12 final size:12

Alignment explanation


    Indices: 39--68  Score: 51
    Period size: 12  Copynumber: 2.5  Consensus size: 12

         29 ATCCTGTTGT

                        
         39 TGATGATGATGC
          1 TGATGATGATGC

                 *      
         51 TGATGCTGATGC
          1 TGATGATGATGC

                  
         63 TGATGA
          1 TGATGA

         69 ATTTGAGATT


Statistics
Matches: 16,  Mismatches: 2, Indels: 0
        0.89            0.11        0.00

Matches are distributed among these distances:
  12   16  1.00

ACGTcount: A:0.23, C:0.10, G:0.33, T:0.33


Consensus pattern (12 bp):   
TGATGATGATGC
Done.