Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Cotton_A_36666

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 717

Length: 1196
ACGTcount: A:0.33, C:0.18, G:0.24, T:0.25


Found at i:291 original size:18 final size:18

Alignment explanation


    Indices: 268--302  Score: 61
    Period size: 18  Copynumber: 1.9  Consensus size: 18

        258 ATCATCACAT

                              
        268 CATGAACATGATCATGAC
          1 CATGAACATGATCATGAC

                   *         
        286 CATGAACTTGATCATGA
          1 CATGAACATGATCATGA

        303 TGGTGTTTTC


Statistics
Matches: 16,  Mismatches: 1, Indels: 0
        0.94            0.06        0.00

Matches are distributed among these distances:
  18   16  1.00

ACGTcount: A:0.37, C:0.20, G:0.17, T:0.26


Consensus pattern (18 bp):   
CATGAACATGATCATGAC
Done.