Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Cotton_A_26009

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 1814
ACGTcount: A:0.28, C:0.24, G:0.24, T:0.25


Found at i:578 original size:15 final size:15

Alignment explanation


    Indices: 558--588  Score: 62
    Period size: 15  Copynumber: 2.1  Consensus size: 15

        548 CACAAATCAT

                           
        558 TGAAGAAGAAGATGA
          1 TGAAGAAGAAGATGA

                           
        573 TGAAGAAGAAGATGA
          1 TGAAGAAGAAGATGA

             
        588 T
          1 T

        589 AATGACGATC


Statistics
Matches: 16,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  15   16  1.00

ACGTcount: A:0.52, C:0.00, G:0.32, T:0.16


Consensus pattern (15 bp):   
TGAAGAAGAAGATGA
Done.