Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Cotton_A_22873

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 246

Length: 411
ACGTcount: A:0.21, C:0.07, G:0.42, T:0.30


Found at i:222 original size:12 final size:12

Alignment explanation


    Indices: 207--245  Score: 51
    Period size: 12  Copynumber: 3.2  Consensus size: 12

        197 GTTTTGGAAT

                *       
        207 TGGTGGTGGTGG
          1 TGGTAGTGGTGG

                   *    
        219 TGGTAGTAGTGG
          1 TGGTAGTGGTGG

                     *  
        231 TGGTAGTGGAGG
          1 TGGTAGTGGTGG

               
        243 TGG
          1 TGG

        246 AACTGGAACT


Statistics
Matches: 23,  Mismatches: 4, Indels: 0
        0.85            0.15        0.00

Matches are distributed among these distances:
  12   23  1.00

ACGTcount: A:0.10, C:0.00, G:0.59, T:0.31


Consensus pattern (12 bp):   
TGGTAGTGGTGG
Done.