Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Cotton_A_23107

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 421

Length: 702
ACGTcount: A:0.21, C:0.09, G:0.44, T:0.25


Found at i:455 original size:96 final size:96

Alignment explanation


    Indices: 340--515  Score: 241
    Period size: 96  Copynumber: 1.8  Consensus size: 96

        330 TGTAGGTGGT

                          *             ***         *     *                  
        340 GCTTCTGGATATGGTAGTGGAGGTGGTGTTGGTA-GTGGTGGC-GGGTATGGAGAAGC-CGGTGG
          1 GCTTCTGGATATGGAAGTGGAGGTGGTGAAAG-AGGTGG-AGCTGGATATGGAGAAGCTC-GTGG

                                              
        402 ACATGGAGGTGGTGGTGGCAGTGGTGGTGGGGGA
         63 ACATGGAGGTGGTGGTGGCAGTGGTGGTGGGGGA

                                                                *            
        436 GCTTCTGGATATGGAAGTGGAGGTGGTGAAAGAGGTGGAGCTGGATATGGAGGAGCTCGTGGACA
          1 GCTTCTGGATATGGAAGTGGAGGTGGTGAAAGAGGTGGAGCTGGATATGGAGAAGCTCGTGGACA

                           
        501 TGGAGGTGGTGGTGG
         66 TGGAGGTGGTGGTGG

        516 TGGCGGGAGT


Statistics
Matches: 70,  Mismatches: 7, Indels: 6
        0.84            0.08        0.07

Matches are distributed among these distances:
  95    3  0.04
  96   66  0.94
  97    1  0.01

ACGTcount: A:0.18, C:0.07, G:0.51, T:0.24


Consensus pattern (96 bp):   
GCTTCTGGATATGGAAGTGGAGGTGGTGAAAGAGGTGGAGCTGGATATGGAGAAGCTCGTGGACA
TGGAGGTGGTGGTGGCAGTGGTGGTGGGGGA
Done.