Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Cotton_A_18621

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 723

Length: 1206
ACGTcount: A:0.27, C:0.22, G:0.24, T:0.27


Found at i:531 original size:14 final size:15

Alignment explanation


    Indices: 504--532  Score: 51
    Period size: 14  Copynumber: 2.0  Consensus size: 15

        494 CCAACATTAT

                           
        504 CATCCATGGATTGCA
          1 CATCCATGGATTGCA

                           
        519 CATCCAT-GATTGCA
          1 CATCCATGGATTGCA

        533 AACAAGGAGG


Statistics
Matches: 14,  Mismatches: 0, Indels: 1
        0.93            0.00        0.07

Matches are distributed among these distances:
  14    7  0.50
  15    7  0.50

ACGTcount: A:0.28, C:0.28, G:0.17, T:0.28


Consensus pattern (15 bp):   
CATCCATGGATTGCA
Done.