Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Cotton_A_08278

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 201

Length: 336
ACGTcount: A:0.12, C:0.22, G:0.39, T:0.26


Found at i:51 original size:18 final size:18

Alignment explanation


    Indices: 4--72  Score: 96
    Period size: 18  Copynumber: 4.2  Consensus size: 18

          1 ATG

                              
          4 GGACCTGGTGGACCGGGA
          1 GGACCTGGTGGACCGGGA

                              
         22 GGA----G-GG-CCGGGA
          1 GGACCTGGTGGACCGGGA

                              
         34 GGACCTGGTGGACCGGGA
          1 GGACCTGGTGGACCGGGA

                              
         52 GGACCTGGTGGACCGGGA
          1 GGACCTGGTGGACCGGGA

               
         70 GGA
          1 GGA

         73 TGGGGAGGAG


Statistics
Matches: 45,  Mismatches: 0, Indels: 12
        0.79            0.00        0.21

Matches are distributed among these distances:
  12    9  0.20
  13    2  0.04
  14    1  0.02
  16    1  0.02
  17    2  0.04
  18   30  0.67

ACGTcount: A:0.17, C:0.20, G:0.54, T:0.09


Consensus pattern (18 bp):   
GGACCTGGTGGACCGGGA
Done.