Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Cotton_A_38100

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 810

Length: 1350
ACGTcount: A:0.28, C:0.17, G:0.24, T:0.32


Found at i:119 original size:24 final size:24

Alignment explanation


    Indices: 69--127  Score: 61
    Period size: 24  Copynumber: 2.5  Consensus size: 24

         59 GCGCGAGAGT

                            *     * 
         69 TTTGAATGTTTCAAGCCCCAAAGC
          1 TTTGAATGTTTCAAGCACCAAACC

                               *     
         93 TTTGAATG-TTCTAAGCACTAAACC
          1 TTTGAATGTTTC-AAGCACCAAACC

                         
        117 TTTG--TGTTTCA
          1 TTTGAATGTTTCA

        128 CTAGTTCTAG


Statistics
Matches: 30,  Mismatches: 3, Indels: 6
        0.77            0.08        0.15

Matches are distributed among these distances:
  22    3  0.10
  23    6  0.20
  24   21  0.70

ACGTcount: A:0.27, C:0.20, G:0.15, T:0.37


Consensus pattern (24 bp):   
TTTGAATGTTTCAAGCACCAAACC
Done.