Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Cotton_A_39905

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 489

Length: 815
ACGTcount: A:0.26, C:0.25, G:0.24, T:0.26


Found at i:634 original size:6 final size:6

Alignment explanation


    Indices: 623--661  Score: 78
    Period size: 6  Copynumber: 6.5  Consensus size: 6

        613 TCTATCCCCA

                                                         
        623 GCATGG GCATGG GCATGG GCATGG GCATGG GCATGG GCA
          1 GCATGG GCATGG GCATGG GCATGG GCATGG GCATGG GCA

        662 GAGCAACCAA


Statistics
Matches: 33,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
   6   33  1.00

ACGTcount: A:0.18, C:0.18, G:0.49, T:0.15


Consensus pattern (6 bp):   
GCATGG

Done.