Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Cotton_A_27072

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 696

Length: 1161
ACGTcount: A:0.33, C:0.21, G:0.21, T:0.25


Found at i:87 original size:15 final size:15

Alignment explanation


    Indices: 67--134  Score: 109
    Period size: 15  Copynumber: 4.5  Consensus size: 15

         57 CAATGGCGAA

                       *   
         67 AAATCAAAAGATGAC
          1 AAATCAAAAGACGAC

                           
         82 AAATCAAAAGACGAC
          1 AAATCAAAAGACGAC

                           
         97 AAATCAAAAGACGAC
          1 AAATCAAAAGACGAC

                       *   
        112 AAATCAAAAGATGAC
          1 AAATCAAAAGACGAC

              *     
        127 AAGTCAAA
          1 AAATCAAA

        135 GCATGAAGTC


Statistics
Matches: 50,  Mismatches: 3, Indels: 0
        0.94            0.06        0.00

Matches are distributed among these distances:
  15   50  1.00

ACGTcount: A:0.60, C:0.16, G:0.13, T:0.10


Consensus pattern (15 bp):   
AAATCAAAAGACGAC

Done.