Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Cotton_A_14396

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3966
ACGTcount: A:0.28, C:0.20, G:0.23, T:0.29


Found at i:3050 original size:63 final size:63

Alignment explanation


    Indices: 2951--3075  Score: 232
    Period size: 63  Copynumber: 2.0  Consensus size: 63

       2941 CAGTCTGAGG

                                                                           
       2951 TGTTAAGTACTTCTAGTTCTATGAGAAAGGTCATGTCCCTCGAGCCAGCGGAGCATAAATCTA
          1 TGTTAAGTACTTCTAGTTCTATGAGAAAGGTCATGTCCCTCGAGCCAGCGGAGCATAAATCTA

                                                 *  *                     
       3014 TGTTAAGTACTTCTAGTTCTATGAGAAAGGTCATGTCTCTTGAGCCAGCGGAGCATAAATCT
          1 TGTTAAGTACTTCTAGTTCTATGAGAAAGGTCATGTCCCTCGAGCCAGCGGAGCATAAATCT

       3076 GACATTCTTA


Statistics
Matches: 60,  Mismatches: 2, Indels: 0
        0.97            0.03        0.00

Matches are distributed among these distances:
  63   60  1.00

ACGTcount: A:0.28, C:0.19, G:0.22, T:0.30


Consensus pattern (63 bp):   
TGTTAAGTACTTCTAGTTCTATGAGAAAGGTCATGTCCCTCGAGCCAGCGGAGCATAAATCTA
Done.