Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Cotton_A_07677

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 433

Length: 723
ACGTcount: A:0.26, C:0.18, G:0.31, T:0.24


Found at i:658 original size:6 final size:6

Alignment explanation


    Indices: 647--680  Score: 68
    Period size: 6  Copynumber: 5.7  Consensus size: 6

        637 ATTAGCATTC

                                                   
        647 AGGCTG AGGCTG AGGCTG AGGCTG AGGCTG AGGC
          1 AGGCTG AGGCTG AGGCTG AGGCTG AGGCTG AGGC

        681 AAGCTTAGCT


Statistics
Matches: 28,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
   6   28  1.00

ACGTcount: A:0.18, C:0.18, G:0.50, T:0.15


Consensus pattern (6 bp):   
AGGCTG

Done.